# Publications

Publications Produced by the Penn State Center for Machine Learning and Applications.

- Pengtao Yue, Jimmy Feng, Chun Liu and Jie Shen, A Diffuse-Interface Method for Simulating Two-Phase Flows of Complex Fluids. Journal of Fluid Mechanics, Vol 515, 293--317 (2004).
- Qiang Du, Chun Liu, Rolf Ryham and Xiaoqiang Wang, The Phase Field Formulation of the Willmore Problem. Nonlinearity 18, 1249 -- 1267 (2005).
- Fanghua Lin, Chun Liu and Ping Zhang, On Hydrodynamics of Viscoelastic Fluids. Accepted for publication to Comm. Pure Appl. Math. Vol LVIII, 1 --- 35 (2005).
- Qiang Du, Chun Liu and Xiaoqiang Wang, A Phase Field Approach in the Numerical Study of the Elastic Bending Energy for Vesicle Membranes. Journal of Computational Physics, Vol 198, No. 2, 450--468 (2004).
- Hunter, D. R. and Li, R. (2005). Variable selection using MM algorithm. Annals of Statistics. In Press.
- Fan, J. and Li, R. (2001). Variable selection via nonconcave penalized likelihood and its oracle properties. Journal of American Statistical Association, 96. 1348-1360.
- Liang, J. J., Fang, K. T., Hickernell, F. and Li, R. (2001). Testing multivariate uniformity and its applications. Mathematics of Computation. 70, 337-355.
- Cai, Z, Fan, J. and Li, R. (2000). Efficient estimation and inferences for varying-coefficient models. Journal of American Statistical Association, 95, 888-902.
- Jia Li, ``Clustering based on a multi-layer mixture model,'' Journal of Computational and Graphical Statistics, 2004.
- Jia Li, Hongyuan Zha, ``Two-way Poisson mixture models for simultaneous document classification and word clustering,'' Journal of Computational Statistics and Data Analysis, 2004, 18pp., in press.
- Jia Li, James Z. Wang, ``Automatic linguistic indexing of pictures by a statistical modeling approach,'' IEEE Transactions on Pattern Analysis and Machine Intelligence, 25(9):1075-1088,2003.
- Jia Li, Webb Miller, ``Significance of interspecies matches when evolutionary rate varies,'' Journal of Computational Biology, 10(3-4):537-554, 2003.
- K. Ozturk, Y. Zhong, L. Chen, C. Wolverton, J. O. Sofo and Z. Liu, "Linking First-Principles Energetics to the Calphad: An Application to thermodynamic Modeling of the Al-Ca Binary System," Metall. Mater. Trans. A 36, 5 - 13 (2005)
- T. Thonhauser, T. J. Scheidemantel and J. O. Sofo, "Improved thermoelectric devices using bismuth alloys," Appl. Phys. Lett. 85, 588 - 590 (2004)
- E. A. Leed, J. O. Sofo and C. Pantano, "Electronic structure calculations of physisorption and chemisorption on oxide glass surfaces," to appear in Phys. Rev. B, (2004)
- E. A. Leed, J. O. Sofo and C. Pantano, "Electronic structure calculations of physisorption and chemisorption on oxide glass surfaces," to appear in Phys. Rev. B, (2004)
- C. Jiang, C. Wolverton, J. O. Sofo, L. Chen and Z. Liu, "First-principles study of binary bcc alloys using special quasirandom structures," Phys. Rev. B 69, 214202 (2004)
- J. D. Fuhr, A. G. Sal and J. O. Sofo, "STM chemical signature of point defects on the MoS2(0001) surface," Phys. Rev. Lett. 92, 026802 (2004)
- H. Fu and J.L Barlow, A Regularized Structured Total Least Squares Algorithm for High Resolution Image Reconstruction, Linear Algebra and Its Applications, 391:75--98,2004.
- J.L. Barlow, N. Bosner, and Z. Drmac, A Faster Stable Bidiagonal Reduction Procedure, Linear Algebra and Its Applications,397:35-84,2005.
- J.L. Barlow, A. Smoktunowicz, and H. Erbay, Improved Gram-Schmidt Downdating methods, to appear, BIT.
- H. Erbay and J.L. Barlow, An Alternative Algorithms for Sliding Window ULV Decomposition, to appear, Computing.
- Q.Du and D.Wang, Anisotropic Centroidal Voronoi Tessellations and Their Applications, SIAM J. Sci Comp., 26, pp.737-761.
- Q.Du, L. Ju and M. Gunzburger, Probablistic algorithms for computing the CVTs and their parallel implementation, Parallel Computing, 28, pp.1477-1500, 2002.
- Q.Du and X.Wang, Tessellation and Clustering by Mixture Models Cen Their Parallel Implementations, SIAM Data Mining Conference, 2004.
- Q.Du and X.Wang, Voronoi tessellation based algorithms for vector fields visualization and segmentation, Proceedings of the IEEE conference on visualization, (VIS2004), pp43-50, Austin, TX, 2004.
- D.J. Miller and J. Browning, ``A mixture model and EM-based algorithm for class discovery, robust classification, and outlier rejection in mixed labeled/unlabeled data sets'', IEEE Trans. on Pattern Analysis and Machine Intelligence, Nov. 2003, pp. 1468-1483.
- Q. Zhao and D. J. Miller, ``Mixture modeling with pairwise,instance-level class constraints'', To appear in Neural Computation, 2005.
- M. W. Graham and D. J. Miller, ``Unsupervised learning of mixtures on huge spaces with integrated feature and component selection'', ANNIE2004.
- D.J. Miller and Q. Zhao, ``A sequence-based extension of mean-field annealing using the Forward/Backward algorithm: application to image segmentation'', IEEE Trans. on Signal Processing, Oct. 2003, pp. 2692-2705.
- D. J. Miller and H. S. Uyar, ``A mixture of experts classifier with learning based on both labelled and unlabelled data'', Neural Information Processing Systems, 1997, pp. 571-577.
- Peng, H.H., Hodgson, L., Henderson, A.J., and Dong, C. 2005. Involvement of phospholipase C signaling in melanoma cell-induced endothelial junction disassembly. Frontiers in Bioscience 10: 1597-1606.
- Slattery, M., Liang, S. and Dong, C. 2005. Distinct role of hydrodynamic shear in PMN-facilitated melanoma cell extravasation. Am. J. Physiol. 288(4): C831-839.
- Hodgson, L., Henderson, A.J., and Dong, C. 2003. Melanoma cell migration to type IV collagen requires activation of NF-kappaB. Oncogene 22: 98-108.
- Dong, C. and Lei, X. 2000. Biomechanics of cell rolling: Shear flow, cell-surface adhesion, and cell deformability. J. Biomechanics 33: 35-43.
- Dong, C., Cao, J. Struble, E. and Lipowsky, H.H. 1999. Mechanics of leukocyte deformation and adhesion to endothelium in shear flow. Ann. Biomed. Eng.27: 298-312.
- R. Dennis Cook and Bing Li (2002). Dimension reduction for conditional mean in regression. The Annals of Statistics. 30, 455-474.
- Francesca Chiaromonte, Dennis Cook, and Bing Li (2002). Partial dimension reduction with categorical predictors. The Annals of Statistics. 30, 475-497.
- Bing Li, R. Dennis Cook, and Francesca Chiaromonte (2003). Dimension reduction for conditional mean in regression with categorical predictors. The Annals of Statistics. 31, 1636--1668.
- R. Dennis Cook and Bing Li (2003). Determining the dimension of Iterative Hessian Transformation. To appear in The Annals of Statistics. 32.
- Bing Li, Hongyuan Zha, and Francesca Chiaromonte (2004). Contour regression: a general approach to dimension reduction. To appear in The Annals of Statistics.