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Publications Produced by the Penn State Center for Machine Learning and Applications.

  1. Pengtao Yue, Jimmy Feng, Chun Liu and Jie Shen, A Diffuse-Interface Method for Simulating Two-Phase Flows of Complex Fluids. Journal of Fluid Mechanics, Vol 515, 293--317 (2004).
  2. Qiang Du, Chun Liu, Rolf Ryham and Xiaoqiang Wang, The Phase Field Formulation of the Willmore Problem. Nonlinearity 18, 1249 -- 1267 (2005).
  3. Fanghua Lin, Chun Liu and Ping Zhang, On Hydrodynamics of Viscoelastic Fluids. Accepted for publication to Comm. Pure Appl. Math. Vol LVIII, 1 --- 35 (2005).
  4. Qiang Du, Chun Liu and Xiaoqiang Wang, A Phase Field Approach in the Numerical Study of the Elastic Bending Energy for Vesicle Membranes. Journal of Computational Physics, Vol 198, No. 2, 450--468 (2004).
  5. Hunter, D. R. and Li, R. (2005). Variable selection using MM algorithm. Annals of Statistics. In Press.
  6. Fan, J. and Li, R. (2001). Variable selection via nonconcave penalized likelihood and its oracle properties. Journal of American Statistical Association, 96. 1348-1360.
  7. Liang, J. J., Fang, K. T., Hickernell, F. and Li, R. (2001). Testing multivariate uniformity and its applications. Mathematics of Computation. 70, 337-355.
  8. Cai, Z, Fan, J. and Li, R. (2000). Efficient estimation and inferences for varying-coefficient models. Journal of American Statistical Association, 95, 888-902.
  9. Jia Li, ``Clustering based on a multi-layer mixture model,'' Journal of Computational and Graphical Statistics, 2004.
  10. Jia Li, Hongyuan Zha, ``Two-way Poisson mixture models for simultaneous document classification and word clustering,'' Journal of Computational Statistics and Data Analysis, 2004, 18pp., in press.
  11. Jia Li, James Z. Wang, ``Automatic linguistic indexing of pictures by a statistical modeling approach,'' IEEE Transactions on Pattern Analysis and Machine Intelligence, 25(9):1075-1088,2003.
  12. Jia Li, Webb Miller, ``Significance of interspecies matches when evolutionary rate varies,'' Journal of Computational Biology, 10(3-4):537-554, 2003.
  13. K. Ozturk, Y. Zhong, L. Chen, C. Wolverton, J. O. Sofo and Z. Liu, "Linking First-Principles Energetics to the Calphad: An Application to thermodynamic Modeling of the Al-Ca Binary System," Metall. Mater. Trans. A 36, 5 - 13 (2005)
  14. T. Thonhauser, T. J. Scheidemantel and J. O. Sofo, "Improved thermoelectric devices using bismuth alloys," Appl. Phys. Lett. 85, 588 - 590 (2004)
  15. E. A. Leed, J. O. Sofo and C. Pantano, "Electronic structure calculations of physisorption and chemisorption on oxide glass surfaces," to appear in Phys. Rev. B, (2004)
  16. E. A. Leed, J. O. Sofo and C. Pantano, "Electronic structure calculations of physisorption and chemisorption on oxide glass surfaces," to appear in Phys. Rev. B, (2004)
  17. C. Jiang, C. Wolverton, J. O. Sofo, L. Chen and Z. Liu, "First-principles study of binary bcc alloys using special quasirandom structures," Phys. Rev. B 69, 214202 (2004)
  18. J. D. Fuhr, A. G. Sal and J. O. Sofo, "STM chemical signature of point defects on the MoS2(0001) surface," Phys. Rev. Lett. 92, 026802 (2004)
  19. H. Fu and J.L Barlow, A Regularized Structured Total Least Squares Algorithm for High Resolution Image Reconstruction, Linear Algebra and Its Applications, 391:75--98,2004.
  20. J.L. Barlow, N. Bosner, and Z. Drmac, A Faster Stable Bidiagonal Reduction Procedure, Linear Algebra and Its Applications,397:35-84,2005.
  21. J.L. Barlow, A. Smoktunowicz, and H. Erbay, Improved Gram-Schmidt Downdating methods, to appear, BIT.
  22. H. Erbay and J.L. Barlow, An Alternative Algorithms for Sliding Window ULV Decomposition, to appear, Computing.
  23. Q.Du and D.Wang, Anisotropic Centroidal Voronoi Tessellations and Their Applications, SIAM J. Sci Comp., 26, pp.737-761.
  24. Q.Du, L. Ju and M. Gunzburger, Probablistic algorithms for computing the CVTs and their parallel implementation, Parallel Computing, 28, pp.1477-1500, 2002.
  25. Q.Du and X.Wang, Tessellation and Clustering by Mixture Models Cen Their Parallel Implementations, SIAM Data Mining Conference, 2004.
  26. Q.Du and X.Wang, Voronoi tessellation based algorithms for vector fields visualization and segmentation, Proceedings of the IEEE conference on visualization, (VIS2004), pp43-50, Austin, TX, 2004.
  27. D.J. Miller and J. Browning, ``A mixture model and EM-based algorithm for class discovery, robust classification, and outlier rejection in mixed labeled/unlabeled data sets'', IEEE Trans. on Pattern Analysis and Machine Intelligence, Nov. 2003, pp. 1468-1483.
  28. Q. Zhao and D. J. Miller, ``Mixture modeling with pairwise,instance-level class constraints'', To appear in Neural Computation, 2005.
  29. M. W. Graham and D. J. Miller, ``Unsupervised learning of mixtures on huge spaces with integrated feature and component selection'', ANNIE2004.
  30. D.J. Miller and Q. Zhao, ``A sequence-based extension of mean-field annealing using the Forward/Backward algorithm: application to image segmentation'', IEEE Trans. on Signal Processing, Oct. 2003, pp. 2692-2705.
  31. D. J. Miller and H. S. Uyar, ``A mixture of experts classifier with learning based on both labelled and unlabelled data'', Neural Information Processing Systems, 1997, pp. 571-577.
  32. Peng, H.H., Hodgson, L., Henderson, A.J., and Dong, C. 2005. Involvement of phospholipase C signaling in melanoma cell-induced endothelial junction disassembly. Frontiers in Bioscience 10: 1597-1606.
  33. Slattery, M., Liang, S. and Dong, C. 2005. Distinct role of hydrodynamic shear in PMN-facilitated melanoma cell extravasation. Am. J. Physiol. 288(4): C831-839.
  34. Hodgson, L., Henderson, A.J., and Dong, C. 2003. Melanoma cell migration to type IV collagen requires activation of NF-kappaB. Oncogene 22: 98-108.
  35. Dong, C. and Lei, X. 2000. Biomechanics of cell rolling: Shear flow, cell-surface adhesion, and cell deformability. J. Biomechanics 33: 35-43.
  36. Dong, C., Cao, J. Struble, E. and Lipowsky, H.H. 1999. Mechanics of leukocyte deformation and adhesion to endothelium in shear flow. Ann. Biomed. Eng.27: 298-312.
  37. R. Dennis Cook and Bing Li (2002). Dimension reduction for conditional mean in regression. The Annals of Statistics. 30, 455-474.
  38. Francesca Chiaromonte, Dennis Cook, and Bing Li (2002). Partial dimension reduction with categorical predictors. The Annals of Statistics. 30, 475-497.
  39. Bing Li, R. Dennis Cook, and Francesca Chiaromonte (2003). Dimension reduction for conditional mean in regression with categorical predictors. The Annals of Statistics. 31, 1636--1668.
  40. R. Dennis Cook and Bing Li (2003). Determining the dimension of Iterative Hessian Transformation. To appear in The Annals of Statistics. 32.
  41. Bing Li, Hongyuan Zha, and Francesca Chiaromonte (2004). Contour regression: a general approach to dimension reduction. To appear in The Annals of Statistics.
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